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What Are the Most Common Causes of Reprocessing Charges?

Why reprocessing fees sometimes apply and how to avoid them

A reprocessing charge may apply when we need to undo and re-run payroll after it’s already been processed or submitted to HMRC.

These charges help cover the additional time and manual work involved — but we’ll always try to avoid them where possible.


🔁 Common Reasons for Reprocessing Charges:

  • Approving payroll with incorrect or missing data
    (e.g. missed bonuses, new starters, wrong hours)

  • Requesting changes after the payroll has already been submitted
    to HMRC or pension providers

  • Overpayments that need correction on payslips or P45s
    — especially if the employee has already left

  • Late submission of critical information
    (e.g. last-minute tax code changes, changes to net pay)


💡 How to Avoid Reprocessing Fees

  • Always check your Comparison Report and payslips before approving

  • Let us know as early as possible if anything looks off

  • Submit all data by the agreed payroll deadline

  • Only approve payroll once you’re confident everything is correct


💰 What Does It Cost?

If the issue was caused by an error on our side, we’ll fix it at no cost to you.
If not, a reprocessing fee may apply — usually 75–100% of your usual payroll fee, depending on the work involved.

We’ll always be transparent before proceeding.


Questions? Contact us at
📧 support@intelligentpayroll.co.uk — we’re happy to talk it through.